Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs10185737 chr2:37185722 T/A 6.64E-6 362 20.5 12.68 8.73 KM Plot
LIHC rs10188370 chr2:37054683 A/C 1.75E-5 363 20.5 13.53 8.73 KM Plot
LIHC rs10189918 chr2:37167948 G/C 7.37E-6 363 20.5 12.17 8.73 KM Plot
LIHC rs10197739 chr2:240288261 G/T 1.72E-5 368 19.95 20.42 10.12 KM Plot
LIHC rs10201963 chr2:37146824 C/T 1.19E-5 366 20.45 12.17 8.73 KM Plot
LIHC rs10202311 chr2:37190574 T/C 1.05E-5 358 20.45 13.2 8.73 KM Plot
LIHC rs10203552 chr2:37187793 A/C 9.21E-6 365 20.5 13.2 8.73 KM Plot
LIHC rs10209808 chr2:37166989 A/G 1.1E-5 363 20.5 12.17 8.73 KM Plot
LIHC rs10246467 chr7:90318800 A/T 5.23E-5 363 14.5 19.42 20.9 KM Plot
LIHC rs103855 chr2:109532717 G/A 5.57E-7 361 8.48 14 20.7 KM Plot
LIHC rs10490659 chr2:37130724 A/G 8.8E-6 368 20.45 12.17 8.73 KM Plot
LIHC rs10510376 chr3:7952593 A/T 2.15E-7 365 19.15 23.18 3.03 KM Plot
LIHC rs10603800 chr7:90291195 GTC/G 1.43E-5 367 14.1 20.03 20.27 KM Plot
LIHC rs10930313 chr2:169082697 G/A 4.41E-6 367 19.58 21.32 13.87 KM Plot
LIHC rs10953017 chr7:90308412 C/T 1.21E-5 361 14.32 18.6 20.27 KM Plot